![]() If you're working with the Caramazza Lab, I still have my lab manuals for reference.įreesufer is a program created at Charles MGH that packages many functions in neuroimaging for widespread use. ![]() Freesurfer is in fact used by the large neuroimaging compilation project (1200+ subject scans), the Human Connectome Project. You can run commands in freesurfer from the command line using linux. There are some GUI operations in freesurfer but I mostly used the GUI freeview and tkmedit to visual scans. I spend most of my work using the command line. ![]() Many things! But importantly, look through my lab manuals to get a sense of what (and more importantly how) I implemented freesurfer functions. Some important functions are implementation and manual correction of anatomical MRI data, the entire functional preprocessing pipeline from raw functional data to biologically meaningful extractable data, region definition, and time course extraction. ![]()
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